HTML Report Module

Interactive HTML report generation

HTML report generation for VariantCentrifuge.

variantcentrifuge.generate_html_report.generate_html_report(variants_json, summary_json, output_dir, cfg)[source]

Generate an interactive HTML report of variants and summary statistics.

Parameters:

  • variants_json (str) – Path to the variants JSON file containing detailed variant records.

  • summary_json (str) – Path to the summary JSON file containing summary metrics.

  • output_dir (str) – Directory to write the generated HTML report and assets.

  • cfg (Dict[str, Any]) – The main configuration dictionary containing report settings.

Return type:

None