Practical Guides

This section provides practical guides and tutorials for common VariantCentrifuge workflows.

Annotation Strategies

Before using VariantCentrifuge, your VCF files should be properly annotated with functional predictions and population frequency data. Our annotation guides help you:

• Choose the right annotation tools

• Configure annotation pipelines

• Optimize annotation for different analysis types

• Troubleshoot common annotation issues

Analysis Workflows

Learn how to design and execute variant analysis workflows for different research contexts:

• Rare disease analysis

• Cancer genomics

• Population genetics

• Clinical diagnostics

Advanced Usage

Explore advanced VariantCentrifuge features and customization options:

• Custom filter development

• Variant scoring models

• Cohort analysis workflows

• Integration with other tools

• Performance optimization

Privacy and Data Sharing

Learn how to protect participant privacy when sharing genomic data:

• Sample pseudonymization with flexible naming schemas

• Security best practices for mapping tables

• Creating publication-ready datasets

• Reversing pseudonymization for internal use

• Annotation Strategies
• Cohort Analysis Guide
• Rare Disease Analysis Workflow
• Cancer Genomics Analysis
• Variant Scoring Guide
• Custom Filter Development
• Privacy and Pseudonymization
• Performance Optimization